AlphaFold v2.0 and RoseTTAFold workshop

Day 1, Session 1

• Klas Pettersen, NORA - Welcome & overview of the workshop 
• Jon Lærdahl, Oslo University Hospital & University of Oslo - Proteins and techniques for predicting protein structure: an introduction (download presentation here) 
• Inge Jonassen, University of Bergen - Computational structure prediction, CASP and AlphaFold (v1 and v2)    
• Sameer Velankar, EMBL-EBI - AlphaFold Protein Structure Database

Day 1, Session 2

• Randy John Read, Cambridge University - Quality of Protein Structures from experiments and simulations
• Jonas Verhellen, University of Oslo (technical lead): Technical tutorial on how to use our implementations of AlphaFold v2.0 and RoseTTAFold:

1. How to use the algorithms?                                                                                                                                
2. Showcase of protein examples        
3. Try your own candidates: Work hands on with coding. Work could be in groups or individually with tutoring.

Day 2, Session 1

• Dr. Minkyung Baek, University of Washington: RoseTTAFold 
• Philippe Paul Auguste Robert, University of Oslo: From structural biology to practice: AI applied to ultra-large datasets for therapeutics discovery
• Morten Dæhlen / Sabry Razick, University of Oslo: The Fox cluster at University of Oslo and requirements for running AlphaFold v2 and RoseTTAFold 
• Inger Berg Ørstavik, Department of Private Law, University of Oslo: Licensing and legal restrictions for use of AlphaFold, RoseTTAFold and AlphaFold Protein Structure Database
• Jon Lærdahl, Oslo University Hospital & University of Oslo. Some case studies and results, including discussions

Day 2, Session 2

• Victor Greiff, University of Oslo: Future perspectives: from structure to function 
• Jim Brase, Lawrence Livermore National Laboratory, Co-lead of The ATOM consortium and Deputy Associate Director for Computing: The ATOM consortium: from protein structure to drug discovery
• Panel Debate with Randy Read, Jim Brase, Jon Lærdahl, Inge Jonassen, Victor Greiff. Moderator: Klas Pettersen 
• Klas Pettersen, NORA. Closing